0.0
AT1G35650.1
<html><body><title>AT1G35650.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u123565001000i/AT1G35650.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u123565001000i/AT1G35650.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u123565001000i/AT1G35650.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224543401000i">AT2G45434.1</a></td><td>0.770377</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422287002000i">AT4G22870.2</a></td><td>0.716023</td><td>leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420817002000i">AT4G08170.2</a></td><td>0.707909</td><td>inositol 1,3,4-trisphosphate 5/6-kinase family protein</td><td>OMAT4P101640</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223220001000i">AT2G32200.1</a></td><td>0.702561</td><td>unknown protein</td><td>OMAT2P007760</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224612001000i">AT2G46120.1</a></td><td>0.698747</td><td>pre-tRNA</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221441001000i">AT2G14410.1</a></td><td>0.696698</td><td>pseudogene, hypothetical protein, similar to Myosin heavy chain, non-muscle (Zipper protein) (Myosin II)(SP:Q99323) {Drosophila melanogaster}</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521536001000i">AT5G15360.1</a></td><td>0.69317</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220498001000i">AT2G04980.1</a></td><td>0.684699</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220286001000i">AT2G02860.1</a></td><td>0.677993</td><td>SUT2 (SUCROSE TRANSPORTER 2)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u125109001000i">AT1G51090.1</a></td><td>0.67173</td><td>heavy-metal-associated domain-containing protein</td><td>OMAT1P014080</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u124870001000i">AT1G48700.1</a></td><td>-0.801653</td><td>iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121024001000i">AT1G10240.1</a></td><td>-0.801249</td><td>FRS11 (FAR1-related sequence 11)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321238001000i">AT3G12380.1</a></td><td>-0.79334</td><td>ATARP5 (ACTIN-RELATED PROTEIN 5)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222253001000i">AT2G22530.1</a></td><td>-0.791017</td><td>catalytic/ transferase</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522416501000i">AT5G24165.1</a></td><td>-0.766003</td><td>unknown protein</td><td>OMAT5P008200</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422153001000i">AT4G21530.1</a></td><td>-0.755373</td><td>nucleotide binding</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221637001000i">AT2G16370.1</a></td><td>-0.75238</td><td>THY-1 (THYMIDYLATE SYNTHASE 1)</td><td>OMAT2P101970</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521824501000i">AT5G18245.1</a></td><td>-0.746316</td><td>other RNA</td><td>OMAT5P006320</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120300001000i">AT1G03000.1</a></td><td>-0.739474</td><td>PEX6 (PEROXIN 6)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121087001000i">AT1G10870.1</a></td><td>-0.737353</td><td>AGD4 (ARF-GAP domain 4)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u123565001000i/AT1G35650.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>transposable_element_gene</td><td>-</td><td>52/200</td><td>2.22</td><td>7.41e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>transposable</td><td>-</td><td>52/200</td><td>2.22</td><td>7.47e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>element</td><td>-</td><td>52/200</td><td>2.18</td><td>1.41e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>value</td><td>-</td><td>35/200</td><td>2.08</td><td>1.05e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>pseudogene</td><td>-</td><td>24/200</td><td>2.33</td><td>4.03e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>similar</td><td>-</td><td>22/200</td><td>2.13</td><td>2.93e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>retrotransposon</td><td>-</td><td>20/200</td><td>1.97</td><td>1.31e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>gypsy</td><td>-</td><td>11/200</td><td>2.06</td><td>7.73e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
without_OMAT_gene